Transcript: SNHG17:18

Basic information

LNCipedia transcript ID: SNHG17:18 
LNCipedia gene ID: SNHG17
RefSeq ID: NR_015366
Location (hg38): chr20:38420620-38435319
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1045 bp
Exons: 8
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_015366; NR_015366.4
Alternative gene names: ; SNHG17


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.7361 non-coding 
CPAT coding probability 9.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG17:18 no no no no

Available literature

  1. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1755-5:14
4.0 SNHG17:18
4.1 SNHG17:18
5.0 SNHG17:18
5.1 SNHG17:18
5.2 SNHG17:18