Transcript: SNHG1:31
Basic information
LNCipedia transcript ID: SNHG1:31
HGNC Gene Symbol: SNHG1
HGNC Full Gene Name:
small nucleolar RNA host gene 1
Ensembl Gene ID:
ENSG00000255717
Ensembl Transcript ID:
ENST00000545920
Location (hg38): chr11:62853072-62854342
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 625 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545920; ENST00000545920.1; SNHG1-024; OTTHUMT00000396030.1; NONHSAT021843
Alternative gene names: ENSG00000255717; SNHG1; ENSG00000255717.1; OTTHUMG00000167743.1; ENSG00000255717.2; ENSG00000255717.6; UHG; NCRNA00057; LINC00057; lncRNA16
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
Locus conservation? | ||||
---|---|---|---|---|
SNHG1:31 | no | no | no | no |
Available literature
- Zhu (2017), LncRNA16 is a potential biomarker for diagnosis of early-stage lung cancer that promotes cell proliferation by regulating the cell cycle., Oncotarget
- Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
- Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
- Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE
- Li (2014), Discovery of Protein-lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets., Front Bioeng Biotechnol
- You (2014), Noncoding RNA small nucleolar RNA host gene 1 promote cell proliferation in nonsmall cell lung cancer., Indian J Cancer
- Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.
- Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
- Mizutani (2012), Identification and characterization of novel genotoxic stress-inducible nuclear long noncoding RNAs in mammalian cells., PLoS ONE
- Mercer (2010), Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation., BMC Neurosci
- Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic Acids Res.
- Tanaka-Fujita (2007), Human and mouse protein-noncoding snoRNA host genes with dissimilar nucleotide sequences show chromosomal synteny., RNA
- Pelczar (1998), The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family., Mol. Cell. Biol.
- Tycowski (1996), A mammalian gene with introns instead of exons generating stable RNA products., Nature
LNCipedia transcript ID history
LNCipedia version | LNCipedia transcript ID |
---|---|
1.3 | lnc-WDR74-1:24 |
3.1 | lnc-WDR74-1:24 |
4.0 | SNHG1:31 |
4.1 | SNHG1:31 |
5.0 | SNHG1:31 |
5.1 | SNHG1:31 |
5.2 | SNHG1:31 |