Transcript: SNHG6:4

Basic information

LNCipedia transcript ID: SNHG6:4 
LNCipedia gene ID: SNHG6
RefSeq ID: NR_002599
Location (hg38): chr8:66921930-66925542
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 472 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; long non-coding rna db - lncrnadb.com; Biogazelle lncRNA chip; Refseq - Dec 2014; Ensembl release 64 - Sep 2011; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000499996; SNHG6-001; ENST00000499996.1; NR_002599; OTTHUMT00000380023.1; NR_002599.1
Alternative gene names: U87HG; SNHG6; ENSG00000245910.2; ENSG00000245910; OTTHUMG00000164743.2; HBII-276HG; NCRNA00058


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -202.2061 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG6:4 no no no no

Available literature

  1. Yan (2017), LncRNA SNHG6 is Associated with Poor Prognosis of Gastric Cancer and Promotes Cell Proliferation and EMT through Epigenetically Silencing p27 and Sponging miR-101-3p., Cell. Physiol. Biochem.
  2. Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
  3. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  4. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
  5. Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic Acids Res.
  6. Makarova (2005), Noncoding RNA of U87 host gene is associated with ribosomes and is relatively resistant to nonsense-mediated decay., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCF24-2:3
3.1 lnc-TCF24-2:3
4.0 SNHG6:4
4.1 SNHG6:4
5.0 SNHG6:4
5.1 SNHG6:4
5.2 SNHG6:4