Transcript: SOCS2-AS1:2

Basic information

LNCipedia transcript ID: SOCS2-AS1:2 
LNCipedia gene ID: SOCS2-AS1
Location (hg38): chr12:93542463-93571768
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6220 bp
Exons: 4
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000499137
Alternative gene names: ENSG00000246985;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.6799 non-coding 
CPAT coding probability 18.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOCS2-AS1:2 yes no no no

Available literature

  1. Romero (2014), Transcriptome interrogation of human myometrium identifies differentially expressed sense-antisense pairs of protein-coding and long non-coding RNA genes in spontaneous labor at term., J. Matern. Fetal. Neonatal. Med.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBE2N-1:2
3.1 lnc-UBE2N-2:1
4.0 SOCS2-AS1:2
4.1 SOCS2-AS1:2
5.0 SOCS2-AS1:2
5.1 SOCS2-AS1:2
5.2 SOCS2-AS1:2