Transcript: SOCS2-AS1:3

Basic information

LNCipedia transcript ID: SOCS2-AS1:3 
HGNC Gene Symbol: SOCS2-AS1    
HGNC Full Gene Name: SOCS2 antisense RNA 1
Ensembl Gene ID: ENSG00000246985
Ensembl Transcript ID: ENST00000499137
Location (hg38): chr12:93542463-93571768
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3325 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499137; ENST00000499137.2; RP11-887P2.1-001; OTTHUMT00000407726.1; NONHSAT029953; ENST00000499137.6
Alternative gene names: ENSG00000246985; RP11-887P2.1; ENSG00000246985.2; OTTHUMG00000170159.1; ENSG00000246985.3; SOCS2-AS1; ENSG00000246985.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.6799 non-coding 
CPAT coding probability 21.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOCS2-AS1:3 yes no no no

Available literature

  1. Romero (2014), Transcriptome interrogation of human myometrium identifies differentially expressed sense-antisense pairs of protein-coding and long non-coding RNA genes in spontaneous labor at term., J. Matern. Fetal. Neonatal. Med.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBE2N-1:3
3.1 lnc-UBE2N-2:2
4.0 SOCS2-AS1:3
4.1 SOCS2-AS1:3
5.0 SOCS2-AS1:3
5.1 SOCS2-AS1:3
5.2 SOCS2-AS1:3