Transcript: SOCS2-AS1:4

Basic information

LNCipedia transcript ID: SOCS2-AS1:4 
HGNC Gene Symbol: SOCS2-AS1    
HGNC Full Gene Name: SOCS2 antisense RNA 1
Ensembl Gene ID: ENSG00000246985
Ensembl Transcript ID: ENST00000551626
Location (hg38): chr12:93565584-93571398
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 618 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551626; ENST00000551626.1; RP11-887P2.1-004; OTTHUMT00000407729.1; NONHSAT029958
Alternative gene names: ENSG00000246985; RP11-887P2.1; ENSG00000246985.2; OTTHUMG00000170159.1; ENSG00000246985.3; SOCS2-AS1; ENSG00000246985.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.3548 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOCS2-AS1:4 yes no no no

Available literature

  1. Romero (2014), Transcriptome interrogation of human myometrium identifies differentially expressed sense-antisense pairs of protein-coding and long non-coding RNA genes in spontaneous labor at term., J. Matern. Fetal. Neonatal. Med.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBE2N-1:4
3.1 lnc-UBE2N-2:4
4.0 SOCS2-AS1:4
4.1 SOCS2-AS1:4
5.0 SOCS2-AS1:4
5.1 SOCS2-AS1:4
5.2 SOCS2-AS1:4