Transcript: SOCS2-AS1:5

Basic information

LNCipedia transcript ID: SOCS2-AS1:5 
LNCipedia gene ID: SOCS2-AS1
RefSeq ID: NR_038263
Location (hg38): chr12:93565628-93571398
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 574 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_038263; NR_038263.1
Alternative gene names: ; SOCS2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.3548 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOCS2-AS1:5 yes no no no

Available literature

  1. Romero (2014), Transcriptome interrogation of human myometrium identifies differentially expressed sense-antisense pairs of protein-coding and long non-coding RNA genes in spontaneous labor at term., J. Matern. Fetal. Neonatal. Med.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBE2N-2:7
4.0 SOCS2-AS1:5
4.1 SOCS2-AS1:5
5.0 SOCS2-AS1:5
5.1 SOCS2-AS1:5
5.2 SOCS2-AS1:5