Transcript: SOCS2-AS1:8

Basic information

LNCipedia transcript ID: SOCS2-AS1:8 
LNCipedia gene ID: SOCS2-AS1
Location (hg38): chr12:93545246-93566974
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 344 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT029955
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.3548 non-coding 
CPAT coding probability 18.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SOCS2-AS1:8 no no no no

Available literature

  1. Romero (2014), Transcriptome interrogation of human myometrium identifies differentially expressed sense-antisense pairs of protein-coding and long non-coding RNA genes in spontaneous labor at term., J. Matern. Fetal. Neonatal. Med.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UBE2N-2:8
4.0 SOCS2-AS1:8
4.1 SOCS2-AS1:8
5.0 SOCS2-AS1:8
5.1 SOCS2-AS1:8
5.2 SOCS2-AS1:8