Transcript: SPATA3-AS1:3

Basic information

LNCipedia transcript ID: SPATA3-AS1:3 
LNCipedia gene ID: SPATA3-AS1
Location (hg38): chr2:230985925-230996048
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2032 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT077319
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.9359 non-coding 
CPAT coding probability 15.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPATA3-AS1:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPR55-1:12
4.0 SPATA3-AS1:3
4.1 SPATA3-AS1:3
5.0 SPATA3-AS1:3
5.1 SPATA3-AS1:3
5.2 SPATA3-AS1:3