Transcript: SPATA3-AS1:5

Basic information

LNCipedia transcript ID: SPATA3-AS1:5 
HGNC Gene Symbol: SPATA3-AS1    
HGNC Full Gene Name: SPATA3 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000238062
Ensembl Transcript ID: ENST00000446741
Location (hg38): chr2:230987642-230996032
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1100 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446741; TCONS_00003507; ENST00000446741.1; AC105344.2-003; OTTHUMT00000333739.1; NONHSAT077323; ENST00000446741.5
Alternative gene names: ENSG00000238062; XLOC_002517; linc-GPR55; AC105344.2; ENSG00000238062.1; OTTHUMG00000154076.1; SPATA3-AS1; ENSG00000238062.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.9359 non-coding 
CPAT coding probability 6.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPATA3-AS1:5 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR55-1:2
3.1 lnc-GPR55-1:2
4.0 SPATA3-AS1:5
4.1 SPATA3-AS1:5
5.0 SPATA3-AS1:5
5.1 SPATA3-AS1:5
5.2 SPATA3-AS1:5