Transcript: SPATA3-AS1:7

Basic information

LNCipedia transcript ID: SPATA3-AS1:7 
LNCipedia gene ID: SPATA3-AS1
Location (hg38): chr2:230984369-230996032
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3508 bp
Exons: 6
Sources: Broad Institute
Alternative transcript names: TCONS_00002680
Alternative gene names: XLOC_002517; linc-GPR55;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.9359 non-coding 
CPAT coding probability 14.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPATA3-AS1:7 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR55-1:4
3.1 lnc-GPR55-1:4
4.0 SPATA3-AS1:7
4.1 SPATA3-AS1:7
5.0 SPATA3-AS1:7
5.1 SPATA3-AS1:7
5.2 SPATA3-AS1:7