Transcript: SPATA8-AS1:2

Basic information

LNCipedia transcript ID: SPATA8-AS1:2 
HGNC Gene Symbol: SPATA8-AS1    
HGNC Full Gene Name: SPATA8 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000259282
Ensembl Transcript ID: ENST00000558722
Location (hg38): chr15:96772007-96783312
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 465 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558722.1; RP11-143C19.1-001; OTTHUMT00000416570.1; NONHSAT050380
Alternative gene names: ENSG00000259282.1; RP11-143C19.1; OTTHUMG00000172033.1; SPATA8-AS1; ENSG00000259282.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -399.3727 non-coding 
CPAT coding probability 1.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SPATA8-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC016251.1-6:1
4.0 SPATA8-AS1:2
4.1 SPATA8-AS1:2
5.0 SPATA8-AS1:2
5.1 SPATA8-AS1:2
5.2 SPATA8-AS1:2