Transcript: SRGAP3-AS3:3

Basic information

LNCipedia transcript ID: SRGAP3-AS3:3 
LNCipedia gene ID: SRGAP3-AS3
Location (hg38): chr3:9216895-9218087
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 567 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000432981.1; SRGAP3-AS3-001; OTTHUMT00000338116.1; NONHSAT147225
Alternative gene names: ENSG00000227929.2; SRGAP3-AS3; OTTHUMG00000155028.1; ENSG00000227929.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.7963 non-coding 
CPAT coding probability 13.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SRGAP3-AS3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-THUMPD3-2:2
4.0 SRGAP3-AS3:3
4.1 SRGAP3-AS3:3
5.0 SRGAP3-AS3:3
5.1 SRGAP3-AS3:3
5.2 SRGAP3-AS3:3