Transcript: SRGAP3-AS3:4

Basic information

LNCipedia transcript ID: SRGAP3-AS3:4 
HGNC Gene Symbol: SRGAP3-AS3    
HGNC Full Gene Name: SRGAP3 antisense RNA 3
Ensembl Gene ID: ENSG00000227929
Ensembl Transcript ID: ENST00000432981
RefSeq ID: NR_103443
Location (hg38): chr3:9216895-9219508
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1223 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT087750; NR_103443; ENST00000432981.2; NR_103443.1
Alternative gene names: ENSG00000227929.4; SRGAP3-AS3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.7963 non-coding 
CPAT coding probability 12.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SRGAP3-AS3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-THUMPD3-2:4
4.0 SRGAP3-AS3:4
4.1 SRGAP3-AS3:4
5.0 SRGAP3-AS3:4
5.1 SRGAP3-AS3:4
5.2 SRGAP3-AS3:4