Transcript: STK4-AS1:3

Basic information

LNCipedia transcript ID: STK4-AS1:3 
HGNC Gene Symbol: STK4-AS1    
HGNC Full Gene Name: STK4 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000227477
Ensembl Transcript ID: ENST00000434401
Location (hg38): chr20:44963794-44966402
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2065 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434401; ENST00000434401.1; STK4-AS1-001; OTTHUMT00000079405.1
Alternative gene names: ENSG00000227477; RP5-1069P2.4; ENSG00000227477.1; STK4-AS1; OTTHUMG00000032555.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.7175 non-coding 
CPAT coding probability 26.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STK4-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TOMM34-1:2
3.1 lnc-TOMM34-1:1
4.0 STK4-AS1:3
4.1 STK4-AS1:3
5.0 STK4-AS1:3
5.1 STK4-AS1:3
5.2 STK4-AS1:3