Transcript: TCL6:11

Basic information

LNCipedia transcript ID: TCL6:11 
HGNC Gene Symbol: TCL6    
HGNC Full Gene Name: T cell leukemia/lymphoma 6
Ensembl Gene ID: ENSG00000187621
Ensembl Transcript ID: ENST00000497248
Location (hg38): chr14:95663256-95679833
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4232 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000497248; ENST00000497248.1; TCL6-008; OTTHUMT00000315132.1; NONHSAT039479; ENST00000497248.5
Alternative gene names: ENSG00000187621; TCL6; ENSG00000187621.10; OTTHUMG00000149979.2; ENSG00000187621.14; TCL6e1; TNG2; TNG1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.494 non-coding 
CPAT coding probability 58.61% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TCL6:11 no no no no

Available literature

  1. Saitou (2000), Identification of the TCL6 genes within the breakpoint cluster region on chromosome 14q32 in T-cell leukemia., Oncogene
  2. Hallas (1999), Genomic analysis of human and mouse TCL1 loci reveals a complex of tightly clustered genes., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCL1B-1:5
3.1 lnc-TCL1B-1:12
4.0 TCL6:11
4.1 TCL6:11
5.0 TCL6:11
5.1 TCL6:11
5.2 TCL6:11