Transcript: TM4SF1-AS1:1

Basic information

LNCipedia transcript ID: TM4SF1-AS1:1 
HGNC Gene Symbol: TM4SF1-AS1    
HGNC Full Gene Name: TM4SF1 antisense RNA 1
Ensembl Gene ID: ENSG00000240541
Ensembl Transcript ID: ENST00000496491
RefSeq ID: NR_046650
Location (hg38): chr3:149377778-149386583
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 754 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000496491.1; TM4SF1-AS1-001; OTTHUMT00000356365.1; NONHSAT092645; NR_046650; NR_046650.1
Alternative gene names: ENSG00000240541.2; TM4SF1-AS1; OTTHUMG00000159596.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -318.3414 non-coding 
CPAT coding probability 13.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TM4SF1-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TM4SF4-1:1
4.0 TM4SF1-AS1:1
4.1 TM4SF1-AS1:1
5.0 TM4SF1-AS1:1
5.1 TM4SF1-AS1:1
5.2 TM4SF1-AS1:1