Transcript: TMEM212-AS1:1

Basic information

LNCipedia transcript ID: TMEM212-AS1:1 
HGNC Gene Symbol: TMEM212-AS1    
HGNC Full Gene Name: TMEM212 antisense RNA 1
Ensembl Gene ID: ENSG00000234717
Ensembl Transcript ID: ENST00000449106
RefSeq ID: NR_046852
Location (hg38): chr3:171876352-171900740
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 427 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00005881; ENST00000449106; ENST00000449106.1; TMEM212-AS1-001; OTTHUMT00000346408.1; NONHSAT093236; NR_046852; NR_046852.1
Alternative gene names: XLOC_003326; linc-PLD1; ENSG00000234717; TMEM212-AS1; ENSG00000234717.1; OTTHUMG00000156879.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.0753 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMEM212-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PLD1-1:1
3.1 lnc-PLD1-1:1
4.0 TMEM212-AS1:1
4.1 TMEM212-AS1:1
5.0 TMEM212-AS1:1
5.1 TMEM212-AS1:1
5.2 TMEM212-AS1:1