Transcript: TMEM212-IT1:1

Basic information

LNCipedia transcript ID: TMEM212-IT1:1 
HGNC Gene Symbol: TMEM212-IT1    
HGNC Full Gene Name: TMEM212 intronic transcript 1
Ensembl Gene ID: ENSG00000235943
Ensembl Transcript ID: ENST00000456146
Location (hg38): chr3:171894436-171895240
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 470 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005659; ENST00000456146.1; TMEM212-IT1-001; OTTHUMT00000346407.1; NONHSAT093237
Alternative gene names: XLOC_002922; linc-FNDC3B; ENSG00000235943.1; TMEM212-IT1; OTTHUMG00000156878.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -342.8412 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMEM212-IT1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FNDC3B-1:1
3.1 lnc-FNDC3B-1:1
4.0 TMEM212-IT1:1
4.1 TMEM212-IT1:1
5.0 TMEM212-IT1:1
5.1 TMEM212-IT1:1
5.2 TMEM212-IT1:1