Transcript: TMEM254-AS1:9

Basic information

LNCipedia transcript ID: TMEM254-AS1:9 
HGNC Gene Symbol: TMEM254-AS1    
HGNC Full Gene Name: TMEM254 antisense RNA 1
Ensembl Gene ID: ENSG00000230091
Ensembl Transcript ID: ENST00000412298
Location (hg38): chr10:80046860-80078895
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3121 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412298; ENST00000412298.1; RP11-369J21.5-001; OTTHUMT00000049027.1; ENST00000412298.5
Alternative gene names: ENSG00000230091; RP11-369J21.5; ENSG00000230091.1; OTTHUMG00000018601.1; ENSG00000230091.2; TMEM254-AS1; ENSG00000230091.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.1968 non-coding 
CPAT coding probability 10.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMEM254-AS1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SFTPD-1:2
3.1 lnc-SFTPD-1:2
4.0 TMEM254-AS1:9
4.1 TMEM254-AS1:9
5.0 TMEM254-AS1:9
5.1 TMEM254-AS1:9
5.2 TMEM254-AS1:9