Transcript: TRAM2-AS1:10

Basic information

LNCipedia transcript ID: TRAM2-AS1:10 
LNCipedia gene ID: TRAM2-AS1
Location (hg38): chr6:52577309-52584000
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2060 bp
Exons: 4
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1163:3
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -44.0192 non-coding 
CPAT coding probability 6.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRAM2-AS1:10 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 TRAM2-AS1:10
4.1 TRAM2-AS1:10
5.0 TRAM2-AS1:10
5.1 TRAM2-AS1:10
5.2 TRAM2-AS1:10