Transcript: TRG-AS1:5

Basic information

LNCipedia transcript ID: TRG-AS1:5 
LNCipedia gene ID: TRG-AS1
Location (hg38): chr7:38341615-38378637
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3478 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000515771
Alternative gene names: ENSG00000250924; AC007245.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.188 non-coding 
CPAT coding probability 4.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRG-AS1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STARD3NL-1:1
3.1 lnc-STARD3NL-1:1
4.0 TRG-AS1:5
4.1 TRG-AS1:5
5.0 TRG-AS1:5
5.1 TRG-AS1:5
5.2 TRG-AS1:5