Transcript: TRG-AS1:6

Basic information

LNCipedia transcript ID: TRG-AS1:6 
LNCipedia gene ID: TRG-AS1
Ensembl Gene ID: ENSG00000281103
Ensembl Transcript ID: ENST00000629357
Location (hg38): chr7:38341615-38378804
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3645 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000629357.1
Alternative gene names: ENSG00000281103.1; TRG-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.188 non-coding 
CPAT coding probability 3.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRG-AS1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 TRG-AS1:6
4.1 TRG-AS1:6
5.0 TRG-AS1:6
5.1 TRG-AS1:6
5.2 TRG-AS1:6