Transcript: TRHDE-AS1:4

Basic information

LNCipedia transcript ID: TRHDE-AS1:4 
LNCipedia gene ID: TRHDE-AS1
RefSeq ID: NR_026836
Location (hg38): chr12:72262547-72273509
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3160 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000426250; ENST00000426250.2; AC087886.1-002; OTTHUMT00000317877.2; NONHSAT029466; NR_026836; NR_026836.1
Alternative gene names: ENSG00000236333; AC087886.1; ENSG00000236333.2; OTTHUMG00000150370.2; ; TRHDE-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.4636 non-coding 
CPAT coding probability 42.62% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TRHDE-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFC3H1-2:2
3.1 lnc-ZFC3H1-6:2
4.0 TRHDE-AS1:4
4.1 TRHDE-AS1:4
5.0 TRHDE-AS1:4
5.1 TRHDE-AS1:4
5.2 TRHDE-AS1:4