Transcript: TTLL11-IT1:1

Basic information

LNCipedia transcript ID: TTLL11-IT1:1 
HGNC Gene Symbol: TTLL11-IT1    
HGNC Full Gene Name: TTLL11 intronic transcript 1
Ensembl Gene ID: ENSG00000237548
Ensembl Transcript ID: ENST00000411790
Location (hg38): chr9:121884636-121963719
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1052 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000411790; ENST00000411790.1; TTLL11-IT1-001; OTTHUMT00000053903.1; NONHSAT134568
Alternative gene names: ENSG00000237548; C9orf148; ENSG00000237548.1; TTLL11-IT1; OTTHUMG00000020596.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.514 non-coding 
CPAT coding probability 10.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTLL11-IT1:1 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDUFA8-1:1
3.1 lnc-NDUFA8-1:1
4.0 TTLL11-IT1:1
4.1 TTLL11-IT1:1
5.0 TTLL11-IT1:1
5.1 TTLL11-IT1:1
5.2 TTLL11-IT1:1