Transcript: TUG1:27

Basic information

LNCipedia transcript ID: TUG1:27 
LNCipedia gene ID: TUG1
Location (hg38): chr22:30971439-30973356
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 968 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000569149.1; TUG1-004; OTTHUMT00000431952.1
Alternative gene names: ENSG00000253352.3; TUG1; OTTHUMG00000030444.3; ENSG00000253352.4; ENSG00000253352.8; FLJ20618; NCRNA00080; LINC00080


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.7349 non-coding 
CPAT coding probability 21.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TUG1:27 no no no no

Available literature

  1. Wang (2017), Long non-coding RNA TUG1 promotes migration and invasion by acting as a ceRNA of miR-335-5p in osteosarcoma cells., Cancer Sci.
  2. Lennox (2016), Cellular localization of long non-coding RNAs affects silencing by RNAi more than by antisense oligonucleotides., Nucleic Acids Res.
  3. Ma (2016), Upregulation of long non-coding RNA TUG1 correlates with poor prognosis and disease status in osteosarcoma., Tumour Biol.
  4. Cai (2015), The long noncoding RNA TUG1 regulates blood-tumor barrier permeability by targeting miR-144., Oncotarget
  5. Hu (2015), Protein arginine methyltransferase CARM1 attenuates the paraspeckle-mediated nuclear retention of mRNAs containing IRAlus., Genes Dev.
  6. Huang (2015), Long non-coding RNA TUG1 is up-regulated in hepatocellular carcinoma and promotes cell growth and apoptosis by epigenetically silencing of KLF2., Mol. Cancer
  7. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  8. Liu (2015), Altered expression of long non-coding RNAs during genotoxic stress-induced cell death in human glioma cells., J. Neurooncol.
  9. Pastori (2015), The Bromodomain protein BRD4 controls HOTAIR, a long noncoding RNA essential for glioblastoma proliferation., Proc. Natl. Acad. Sci. U.S.A.
  10. Sugihara (2015), Noncoding RNA Expression Aberration Is Associated with Cancer Progression and Is a Potential Biomarker in Esophageal Squamous Cell Carcinoma., Int J Mol Sci


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OSBP2-2:9
4.0 TUG1:27
4.1 TUG1:27
5.0 TUG1:27
5.1 TUG1:27
5.2 TUG1:27

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