Transcript: XIST:8

Basic information

LNCipedia transcript ID: XIST:8 
LNCipedia gene ID: XIST
Location (hg38): chrX:73820656-73850646
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 16894 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00017339; NONHSAT137544
Alternative gene names: XLOC_008185; linc-NAP1L2-4; NCRNA00001; DXS1089; swd66; LINC00001


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.5471 non-coding 
CPAT coding probability 6.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
XIST:8 no no no no

Available literature

  1. Briese (2016), Whole transcriptome profiling reveals the RNA content of motor axons., Nucleic Acids Res.
  2. Dixon-McDougall (2016), The making of a Barr body: the mosaic of factors that eXIST on the mammalian inactive X chromosome., Biochem. Cell Biol.
  3. Richard (2016), Understanding the Complex Circuitry of lncRNAs at the X-inactivation Center and Its Implications in Disease Conditions., Curr. Top. Microbiol. Immunol.
  4. Sun (2016), Involvement of lncRNA dysregulation in gastric cancer., Histol. Histopathol.
  5. Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
  6. Yue (2016), Dynamic interplay and function of multiple noncoding genes governing X chromosome inactivation., Biochim. Biophys. Acta
  7. Briggs (2015), Single-Cell XIST Expression in Human Preimplantation Embryos and Newly Reprogrammed Female Induced Pluripotent Stem Cells., Stem Cells
  8. Cabili (2015), Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution., Genome Biol.
  9. Cajigas (2015), Evf2 lncRNA/BRG1/DLX1 interactions reveal RNA-dependent inhibition of chromatin remodeling., Development
  10. Cerase (2015), Xist localization and function: new insights from multiple levels., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NAP1L2-1:6
3.1 lnc-NAP1L2-1:6
4.0 XIST:8
4.1 XIST:8
5.0 XIST:8
5.1 XIST:8
5.2 XIST:8

loading