Transcript: lnc-ABCA5-4:1

Basic information

LNCipedia transcript ID: lnc-ABCA5-4:1 
LNCipedia gene ID: lnc-ABCA5-4
Location (hg38): chr17:70888196-70888777
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 248 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025745; NONHSAT055626
Alternative gene names: XLOC_012562; linc-ABCA5-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.2582 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCA5-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABCA5-3:1
3.1 lnc-ABCA5-4:1
4.0 lnc-ABCA5-4:1
4.1 lnc-ABCA5-4:1
5.0 lnc-ABCA5-4:1
5.1 lnc-GRB2-60:1
5.2 lnc-ABCA5-4:1