Transcript: lnc-CCNH-8:1

Basic information

LNCipedia transcript ID: lnc-CCNH-8:1 
LNCipedia gene ID: lnc-CCNH-8
Ensembl Gene ID: ENSG00000250124
Ensembl Transcript ID: ENST00000515706
Location (hg38): chr5:86380660-86381426
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 767 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515706; ENST00000515706.1; CTC-261N6.2-001; OTTHUMT00000369667.1; NONHSAT102561
Alternative gene names: ENSG00000250124; CTC-261N6.2; ENSG00000250124.1; OTTHUMG00000162584.1; AC016550.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.7536 non-coding 
CPAT coding probability 5.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCNH-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC008394.1-2:1
3.1 lnc-AC008394.1-2:1
4.0 lnc-AC008394.1-2:1
4.1 lnc-AC008394.1-2:1
5.0 lnc-AC008394.1-2:1
5.1 lnc-ANKRD34B-112:1
5.2 lnc-CCNH-8:1