Transcript: lnc-PAX8-5:1

Basic information

LNCipedia transcript ID: lnc-PAX8-5:1 
LNCipedia gene ID: lnc-PAX8-5
Location (hg38): chr2:113427254-113427564
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 311 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr2_8625_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.939 non-coding 
CPAT coding probability 6.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAX8-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC016745.1-5:1
4.0 lnc-AC016745.1-5:1
4.1 lnc-AC016745.1-5:1
5.0 lnc-AC016745.1-5:1
5.1 lnc-EN1-39:1
5.2 lnc-PAX8-5:1