Transcript: lnc-ACTRT3-1:1

Basic information

LNCipedia transcript ID: lnc-ACTRT3-1:1 
LNCipedia gene ID: lnc-ACTRT3-1
Ensembl Gene ID: ENSG00000242795
Ensembl Transcript ID: ENST00000469794
Location (hg38): chr3:169613510-169623951
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 513 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000469794.1; RP11-3K16.2-001; OTTHUMT00000351756.1; NONHSAT093149
Alternative gene names: ENSG00000242795.2; RP11-3K16.2; OTTHUMG00000158688.1; AC007849.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.6354 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACTRT3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC078802.1-1:1
4.0 lnc-AC078802.1-1:1
4.1 lnc-AC078802.1-1:1
5.0 lnc-AC078802.1-1:1
5.1 lnc-TBL1XR1-60:1
5.2 lnc-ACTRT3-1:1