Transcript: LINC01897:5

Basic information

LNCipedia transcript ID: LINC01897:5 
HGNC Gene Symbol: LINC01897    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1897
Ensembl Gene ID: ENSG00000267209
Ensembl Transcript ID: ENST00000585702
Location (hg38): chr18:57961231-57964434
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 281 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059467; ENST00000585702.1
Alternative gene names: ENSG00000267209.1; RP11-693L9.2; ENSG00000267209.5; LINC01897


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -187.3799 non-coding 
CPAT coding probability 2.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01897:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC090324.1-3:1
4.0 lnc-AC090324.1-3:1
4.1 lnc-AC090324.1-3:1
5.0 lnc-AC090324.1-3:1
5.1 LINC01897:2
5.2 LINC01897:5

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