Transcript: CKMT2-AS1:30

Basic information

LNCipedia transcript ID: CKMT2-AS1:30 
LNCipedia gene ID: CKMT2-AS1
Location (hg38): chr5:81242330-81242599
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 270 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT102445
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 52.6003 non-coding 
CPAT coding probability 5.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
CKMT2-AS1:30 yes no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACOT12-7:1
4.0 lnc-ACOT12-7:1
4.1 CKMT2-AS1:30
5.0 CKMT2-AS1:30
5.1 CKMT2-AS1:30
5.2 CKMT2-AS1:30