Transcript: LINC02225:4

Basic information

LNCipedia transcript ID: LINC02225:4 
HGNC Gene Symbol: LINC02225    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2225
Ensembl Gene ID: ENSG00000249584
Ensembl Transcript ID: ENST00000510444
Location (hg38): chr5:57890327-57899162
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4069 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009672; ENST00000510444; ENST00000510444.1; RP11-478P10.1-001; OTTHUMT00000367833.1; NONHSAT101592
Alternative gene names: XLOC_004835; linc-ACTBL2-3; ENSG00000249584; RP11-478P10.1; ENSG00000249584.1; OTTHUMG00000162198.1; LINC02225


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.0958 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02225:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACTBL2-3:1
3.1 lnc-ACTBL2-3:1
4.0 lnc-ACTBL2-3:1
4.1 lnc-ACTBL2-3:1
5.0 lnc-ACTBL2-3:1
5.1 LINC02225:2
5.2 LINC02225:4