Transcript: lnc-AGPS-3:2

Basic information

LNCipedia transcript ID: lnc-AGPS-3:2 
LNCipedia gene ID: lnc-AGPS-3
Ensembl Gene ID: ENSG00000229941
Ensembl Transcript ID: ENST00000450227
Location (hg38): chr2:177698490-177723289
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 545 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450227.1; AC012499.1-002; OTTHUMT00000334338.1; NONHSAT075728
Alternative gene names: ENSG00000229941.1; AC012499.1; OTTHUMG00000154189.2; ENSG00000229941.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -157.551 non-coding 
CPAT coding probability 4.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AGPS-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGPS-3:2
4.0 lnc-AGPS-3:2
4.1 lnc-AGPS-3:2
5.0 lnc-AGPS-3:2
5.1 lnc-UBR3-94:3
5.2 lnc-AGPS-3:2