Transcript: lnc-CMTR1-2:1

Basic information

LNCipedia transcript ID: lnc-CMTR1-2:1 
LNCipedia gene ID: lnc-CMTR1-2
Location (hg38): chr6:37500481-37502434
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 543 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011801; NONHSAT112261
Alternative gene names: XLOC_005277; linc-ZFAND3-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.5825 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CMTR1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL353597.1-2:1
3.1 lnc-AL353597.1-2:1
4.0 lnc-AL353597.1-2:1
4.1 lnc-AL353597.1-2:1
5.0 lnc-AL353597.1-2:1
5.1 lnc-PI16-17:1
5.2 lnc-CMTR1-2:1

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