Transcript: lnc-AMY1B-1:7

Basic information

LNCipedia transcript ID: lnc-AMY1B-1:7 
LNCipedia gene ID: lnc-AMY1B-1
Location (hg38): chr1:103418079-103433096
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 439 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00000592; ENST00000455771; ENST00000455771.1; RP11-347K2.2-001; OTTHUMT00000099060.1; NONHSAT004887
Alternative gene names: XLOC_000945; linc-COL11A1; ENSG00000234037; RP11-347K2.2; ENSG00000234037.1; OTTHUMG00000041347.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.0539 non-coding 
CPAT coding probability 8.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AMY1B-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL11A1-2:6
3.1 lnc-AMY1B-1:7
4.0 lnc-AMY1B-1:7
4.1 lnc-AMY1B-1:7
5.0 lnc-AMY1B-1:7
5.1 lnc-EXTL2-25:10
5.2 lnc-AMY1B-1:7