Transcript: lnc-ANKH-1:3

Basic information

LNCipedia transcript ID: lnc-ANKH-1:3 
LNCipedia gene ID: lnc-ANKH-1
Ensembl Gene ID: ENSG00000261360
Ensembl Transcript ID: ENST00000564167
Location (hg38): chr5:14663103-14664275
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 638 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564167.1; CTD-2165H16.4-003; OTTHUMT00000425258.1; NONHSAT100550
Alternative gene names: ENSG00000261360.1; CTD-2165H16.4; OTTHUMG00000174145.1; AC010491.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -141.095 non-coding 
CPAT coding probability 2.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKH-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKH-1:3
4.0 lnc-ANKH-1:3
4.1 lnc-ANKH-1:3
5.0 lnc-ANKH-1:3
5.1 lnc-CDH12-71:10
5.2 lnc-ANKH-1:3