Transcript: LINC02516:3

Basic information

LNCipedia transcript ID: LINC02516:3 
HGNC Gene Symbol: LINC02516    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2516
Ensembl Gene ID: ENSG00000261083
Ensembl Transcript ID: ENST00000563724
RefSeq ID: NR_110838
Location (hg38): chr4:124499942-124558434
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1771 bp
Exons: 9
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007433; ENST00000563724.1; RP11-93I21.3-001; OTTHUMT00000431492.1; NONHSAT098214; NR_110838; NR_110838.1
Alternative gene names: XLOC_004064; linc-NUDT6-5; ENSG00000261083.1; RP11-93I21.3; OTTHUMG00000176090.1; LINC02516; LOC101927087


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.7215 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02516:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD50-1:1
3.1 lnc-ANKRD50-1:1
4.0 lnc-ANKRD50-1:1
4.1 lnc-ANKRD50-1:1
5.0 lnc-ANKRD50-1:1
5.1 LINC02516:2
5.2 LINC02516:3