Transcript: lnc-ANKRD60-2:3

Basic information

LNCipedia transcript ID: lnc-ANKRD60-2:3 
LNCipedia gene ID: lnc-ANKRD60-2
Ensembl Gene ID: ENSG00000225708
Ensembl Transcript ID: ENST00000441277
Location (hg38): chr20:58069054-58072060
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1014 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT080532; ENST00000441277.2; ENST00000441277.6
Alternative gene names: ENSG00000225708.2; RP13-379L11.1; ENSG00000225708.6; AL354984.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.3774 non-coding 
CPAT coding probability 42.32% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ANKRD60-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD60-2:3
4.0 lnc-ANKRD60-2:3
4.1 lnc-ANKRD60-2:3
5.0 lnc-ANKRD60-2:3
5.1 lnc-SPATA2-99:3
5.2 lnc-ANKRD60-2:3

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