Transcript: lnc-APBB1IP-1:15

Basic information

LNCipedia transcript ID: lnc-APBB1IP-1:15 
LNCipedia gene ID: lnc-APBB1IP-1
Location (hg38): chr10:26647986-26653446
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1220 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000423917; ENST00000423917.1; RP13-16H11.1-001; OTTHUMT00000047272.1; NONHSAT011848; ENST00000423917.5
Alternative gene names: ENSG00000231976; RP13-16H11.1; ENSG00000231976.3; OTTHUMG00000017842.1; LINC00202-2; ENSG00000231976.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 107.0606 coding 
CPAT coding probability 57.07% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-APBB1IP-1:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDSS1-1:4
3.1 lnc-PDSS1-1:4
4.0 lnc-APBB1IP-1:15
4.1 lnc-APBB1IP-1:15
5.0 lnc-APBB1IP-1:15
5.1 lnc-NPY4R2-256:21
5.2 lnc-APBB1IP-1:15