Transcript: lnc-API5-6:1

Basic information

LNCipedia transcript ID: lnc-API5-6:1 
LNCipedia gene ID: lnc-API5-6
Ensembl Gene ID: ENSG00000255132
Ensembl Transcript ID: ENST00000524493
Location (hg38): chr11:41394595-41426504
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 578 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524493; ENST00000524493.1; RP11-63C8.1-001; OTTHUMT00000389439.1; NONHSAT018885
Alternative gene names: ENSG00000255132; RP11-63C8.1; ENSG00000255132.1; OTTHUMG00000166372.1; AC090138.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.3403 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-API5-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-API5-5:1
3.1 lnc-API5-6:1
4.0 lnc-API5-6:1
4.1 lnc-API5-6:1
5.0 lnc-API5-6:1
5.1 lnc-CAPRIN1-52:1
5.2 lnc-API5-6:1