Transcript: lnc-ARHGAP21-1:1

Basic information

LNCipedia transcript ID: lnc-ARHGAP21-1:1 
LNCipedia gene ID: lnc-ARHGAP21-1
Location (hg38): chr10:24247279-24251421
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3416 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000413666; ENST00000413666.1; RP11-183E9.3-001; OTTHUMT00000047218.1; NONHSAT011778
Alternative gene names: ENSG00000228508; RP11-183E9.3; ENSG00000228508.1; OTTHUMG00000017822.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.3151 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP21-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARHGAP21-1:1
3.1 lnc-ARHGAP21-1:1
4.0 lnc-ARHGAP21-1:1
4.1 lnc-ARHGAP21-1:1
5.0 lnc-ARHGAP21-1:1
5.1 lnc-MPP7-82:1
5.2 lnc-ARHGAP21-1:1