Transcript: lnc-ASAP2-4:1

Basic information

LNCipedia transcript ID: lnc-ASAP2-4:1 
LNCipedia gene ID: lnc-ASAP2-4
Ensembl Gene ID: ENSG00000242136
Ensembl Transcript ID: ENST00000495580
Location (hg38): chr2:9103440-9104581
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 418 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002813; ENST00000495580; ENST00000495580.1; RP11-734K21.2-001; OTTHUMT00000353398.1; NONHSAT069027
Alternative gene names: XLOC_001335; linc-ASAP2-3; ENSG00000242136; RP11-734K21.2; ENSG00000242136.1; OTTHUMG00000159113.1; AC093904.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.6066 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASAP2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASAP2-3:1
3.1 lnc-ASAP2-4:1
4.0 lnc-ASAP2-4:1
4.1 lnc-ASAP2-4:1
5.0 lnc-ASAP2-4:1
5.1 lnc-SNX17-220:1
5.2 lnc-ASAP2-4:1