Transcript: lnc-ASAP2-4:2

Basic information

LNCipedia transcript ID: lnc-ASAP2-4:2 
LNCipedia gene ID: lnc-ASAP2-4
Ensembl Gene ID: ENSG00000242136
Ensembl Transcript ID: ENST00000463302
Location (hg38): chr2:9104159-9105114
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000463302; ENST00000463302.1; RP11-734K21.2-002; OTTHUMT00000353399.1
Alternative gene names: ENSG00000242136; RP11-734K21.2; ENSG00000242136.1; OTTHUMG00000159113.1; AC093904.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.6066 non-coding 
CPAT coding probability 12.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASAP2-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASAP2-3:2
3.1 lnc-ASAP2-4:2
4.0 lnc-ASAP2-4:2
4.1 lnc-ASAP2-4:2
5.0 lnc-ASAP2-4:2
5.1 lnc-SNX17-220:2
5.2 lnc-ASAP2-4:2