Transcript: lnc-ATP6V1B2-4:1

Basic information

LNCipedia transcript ID: lnc-ATP6V1B2-4:1 
LNCipedia gene ID: lnc-ATP6V1B2-4
Ensembl Gene ID: ENSG00000254260
Ensembl Transcript ID: ENST00000523496
Location (hg38): chr8:20941428-20950175
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 568 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523496; ENST00000523496.1; RP11-369E15.1-001; OTTHUMT00000375267.1; NONHSAT125405
Alternative gene names: ENSG00000254260; RP11-369E15.1; ENSG00000254260.1; OTTHUMG00000163757.1; AC015468.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -185.592 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATP6V1B2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP6V1B2-3:1
3.1 lnc-ATP6V1B2-4:1
4.0 lnc-ATP6V1B2-4:1
4.1 lnc-ATP6V1B2-4:1
5.0 lnc-ATP6V1B2-4:1
5.1 lnc-SH2D4A-26:1
5.2 lnc-ATP6V1B2-4:1