Transcript: lnc-AVPR1A-1:2

Basic information

LNCipedia transcript ID: lnc-AVPR1A-1:2 
LNCipedia gene ID: lnc-AVPR1A-1
Location (hg38): chr12:63292629-63360037
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 470 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000551729; ENST00000551729.1; RP11-1022B3.1-001; OTTHUMT00000406727.1; NONHSAT029110
Alternative gene names: ENSG00000258117; RP11-1022B3.1; ENSG00000258117.1; OTTHUMG00000169974.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.2849 non-coding 
CPAT coding probability 2.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AVPR1A-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AVPR1A-1:2
3.1 lnc-AVPR1A-1:2
4.0 lnc-AVPR1A-1:2
4.1 lnc-AVPR1A-1:2
5.0 lnc-AVPR1A-1:2
5.1 lnc-AVPR1A-1:2
5.2 lnc-AVPR1A-1:2