Transcript: lnc-B3GAT1-2:1

Basic information

LNCipedia transcript ID: lnc-B3GAT1-2:1 
LNCipedia gene ID: lnc-B3GAT1-2
Location (hg38): chr11:134945584-134976699
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1856 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000529881; ENST00000529881.1; RP11-555G19.4-001; OTTHUMT00000393647.1; NONHSAT025285
Alternative gene names: ENSG00000254716; RP11-555G19.4; ENSG00000254716.1; OTTHUMG00000167184.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.4435 non-coding 
CPAT coding probability 30.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-B3GAT1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-B3GAT1-2:1
3.1 lnc-B3GAT1-2:1
4.0 lnc-B3GAT1-2:1
4.1 lnc-B3GAT1-2:1
5.0 lnc-B3GAT1-2:1
5.1 lnc-NCAPD3-9:1
5.2 lnc-B3GAT1-2:1