Transcript: LINC02230:3

Basic information

LNCipedia transcript ID: LINC02230:3 
HGNC Gene Symbol: LINC02230    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2230
Ensembl Gene ID: ENSG00000251543
Ensembl Transcript ID: ENST00000511174
Location (hg38): chr5:73337906-73338533
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 301 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009422; ENST00000511174; ENST00000511174.1; RP11-60A8.2-001; OTTHUMT00000369156.1; NONHSAT102115
Alternative gene names: XLOC_004424; linc-BTF3-4; ENSG00000251543; RP11-60A8.2; ENSG00000251543.1; OTTHUMG00000162497.1; LINC02230


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.9987 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02230:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTF3-4:1
3.1 lnc-BTF3-5:1
4.0 lnc-BTF3-5:1
4.1 lnc-BTF3-5:1
5.0 lnc-BTF3-5:1
5.1 LINC02230:2
5.2 LINC02230:3