Transcript: lnc-BUB1-1:1

Basic information

LNCipedia transcript ID: lnc-BUB1-1:1 
LNCipedia gene ID: lnc-BUB1-1
Ensembl Gene ID: ENSG00000235881
Ensembl Transcript ID: ENST00000414159
Location (hg38): chr2:110709575-110716595
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4395 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414159; ENST00000414159.2; AC114776.3-001; OTTHUMT00000331943.2; NONHSAT073573
Alternative gene names: ENSG00000235881; AC114776.3; ENSG00000235881.2; OTTHUMG00000153642.2; AC114776.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.6477 non-coding 
CPAT coding probability 4.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BUB1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BUB1-1:2
3.1 lnc-BUB1-1:1
4.0 lnc-BUB1-1:1
4.1 lnc-BUB1-1:1
5.0 lnc-BUB1-1:1
5.1 lnc-EN1-79:2
5.2 lnc-BUB1-1:1